Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10002890 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10002890 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12206
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (15.38%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12206

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (15.38%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056629	Metagenome / Metatranscriptome	137	N
F059025	Metagenome / Metatranscriptome	134	Y
F069993	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_100028901	F056629	N/A	MGNWFVKSFDNYYKFIDDDSSMIILTSASLDESGSDMVISFNHLSESVPKYEDMRDSFLSSSYFTSSYTGSSEPVPQIISESLWEEKKTELKSYIINS
Ga0211576_1000289012	F069993	N/A	MPTLEELFKSRQLPSQGGKTAEEAYAIRNSKDIRISAADPFVNTVGMSLARLARKNLGAKGSETLLEEEVTGARLIRTASMPFIYGSELPRLTLRTTTLLDTMRAATGGDDGGGGPLGNLIKKGRDAVLNSKFLGIPQTIIPTKVATNTTIKDTLKSGEIQKNYLEVLKKAKTDGTGKPLGQFLKGTGGGNIKDIGKQALGSAIKLGKDRLREGLFGKAGTTGFNGASLVGLKNTTTNYGSIDSATGVTIAPADADGIIDAKGLMYSKTFNLNIPLNKDGKDTRVGLDKNKQNDPNPNKLDFSDISDEGGLGGRYSKALKDLDTPNKILFSSNPDRKGKSFASKIRGPISKNDFIEKKRGMGQIADTINNTNIFEGETLILGDGTTLDEQDFVPLKFTSIHRNKTVQFRATLSGLSETLSPSWDSHKFIGSPFSNYTYSGIERSVTFNFKVYSLNAVEHKIGWDKINFLNSLVFPQGYYDSSAVVPPFIRLTIGDLYKGKLSFIESLSHTWDDNTPWNVTDKEKTVLSNAVGIITGTPENADIDMKGYRLPMITDVSMTVKFLIGRNNTSGRKFYSFEPQSK
Ga0211576_100028902	F059025	N/A	MANHYFKDTNSYFKLVDETHEIICVTTNFTNKCIAISFDESGGYEKMRDAFIADGITTVSEELFEAKRDEVKDYINENL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10002890

Overview

Ecosystem & Geography

Associated Families

Sequences