Scaffold Ga0211576_10002491

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10002491
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13328
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003155	Metagenome / Metatranscriptome	504	Y
F007835	Metagenome / Metatranscriptome	344	Y
F009890	Metagenome / Metatranscriptome	311	Y
F022185	Metagenome	215	Y
F024679	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000249113	F007835	GGGGG	MPFSASTVRNTREQFVLQKIEYYKVMEYMGRSDWKRHYFDTYKEAVKFFKNKRLTKRKVLIFACRDNELGEVSTGLNDRFIDE
Ga0211576_1000249115	F024679	AGG	MTTISCNILKNRGDITLESGVKSLSACRYATKKLVKSTFFKGLTFKSIPDRIKTLLTTNKGL
Ga0211576_1000249123	F003155	GGAGG	MIKNLIIISLVIVIVTGMSGQEFLDHIAFGLDKLQEIVYNVQSEVK
Ga0211576_1000249128	F022185	N/A	MDFQHGILFFFIGCTVTVIGFFLVFLVINYNKKKEEERIIEQNKPKIHPYGDDTV
Ga0211576_1000249129	F009890	N/A	MSKHLRNIRALFENAKEFKVSRKVDTYEYESLEKLILDDNIRYSEIIEIFTDKDYREWFYQRNFRGKEFNIVRYSEE