Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10002073 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10002073 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14777
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (56.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14777

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (56.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F052865	Metagenome / Metatranscriptome	142	Y
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000207312	F106168	GAGG	MKIHTKAKRFYKRNKMLSIGLAAAGAYYVMTQRGMAPTLAPAPRKAATAMAPTARSGYDAYAPIRNEPYTNSTHFFGPADGDPVFYGF
Ga0211576_1000207314	F083393	GGAG	MLNKVFTLADKYPLVTLAAGTLGIMYLFENYGPMNGLGNVYKDSGTPTDDMFRKTGHTGAPAPGTGRWDTVMPSPSGPQVRYDAEYHTQPIMMDPELEKMLAERGPRPPKQPTSVRHGYEPVIFAGINGMKMW
Ga0211576_1000207316	F049214	N/A	MANLNQGYRSGNAFGRLANVSYENGIGGEDVALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSSSVATDFDGTHGEALEQYGLASISAYYDLGTATVDETDKTGNILAPDYDSGYITFKALEPYAGNLYHLCPTLPLQPKFMDAESGDWHSKNAFPPYDTSSGGLPIGFKGDGTAEHLLQIGSVSAKLYLKQPSGVAKHTLDEASDGESARATASETSLEGISGFLDGEMSPTVNPNWTFGMIIEHGEASLPAFRVVNDSDEYILDGRVRLVGWKYKILELSQDQLSTLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM
Ga0211576_100020732	F086698	N/A	VAGTNQVDKSQIHGTTGSGNVRPISALTQENSTSLLFTRQGRENFASSTHPRMRLTHNVEGSTVSYQARQLPILCGLEDVVAQTGFLITADSSNTITIMIGGSSVSATNGIPLVAGQSIFIDIVRLSKLYAMGASSHTGETANLFWLDM
Ga0211576_1000207320	F052865	N/A	MKMGKMSLKGYTSFVKKHMDLRGLGVVVLGLGLPSVAGYLTSTNIGMRVMGYVDMVPGMSTNVGKAVSAVALTAGVSYLATTAGLLNPSEALTANMIALGLVSVGVLKTMNVPYVGGMVSALPSAGGLAGLGSYGYIGNYHTSEGVGAEMLPAPQQQQLFGVRANVF
Ga0211576_100020734	F075433	AGGAG	MSDEIVMAKVNAFAQELKELGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAMSALMNAMFESIDQQAGEVYDGGRED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10002073

Overview

Ecosystem & Geography

Associated Families

Sequences