NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211576_10001960

Scaffold Ga0211576_10001960


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10001960 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15183
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (74.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010091Metagenome / Metatranscriptome308Y
F038249Metagenome / Metatranscriptome166N
F040134Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000196022F010091N/AMKDINELLAEAETGKISRISGRITEEAMPFWEGCEAKVMSGVQLKPYVVSRLLKENFNIKISESAVRNHFLNLADSNV
Ga0211576_1000196024F040134GAGMYIMNDLIVKSKWKLNSIEYSGLGDKPYFILTNDLGEVKLVPVERGVHNLRSLLDLEEE
Ga0211576_1000196027F038249AGGAMIPSAFRGVIVPAYVKSKTQLVAWALEEFKDSDPITNWEFVRELYCHRFGGILFNLRAEGYEITTLPTKKKGLVSYYCTKVPSRTTIS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.