Scaffold Ga0211576_10001960

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10001960
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15183
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F038249	Metagenome / Metatranscriptome	166	N
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000196022	F010091	N/A	MKDINELLAEAETGKISRISGRITEEAMPFWEGCEAKVMSGVQLKPYVVSRLLKENFNIKISESAVRNHFLNLADSNV
Ga0211576_1000196024	F040134	GAG	MYIMNDLIVKSKWKLNSIEYSGLGDKPYFILTNDLGEVKLVPVERGVHNLRSLLDLEEE
Ga0211576_1000196027	F038249	AGGA	MIPSAFRGVIVPAYVKSKTQLVAWALEEFKDSDPITNWEFVRELYCHRFGGILFNLRAEGYEITTLPTKKKGLVSYYCTKVPSRTTIS