NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10001410

Scaffold Ga0211576_10001410


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10001410 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18470
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001721Metagenome / Metatranscriptome647Y
F013153Metagenome274Y
F026586Metagenome197Y
F087901Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000141020F001721GGAGMSIWTNERTEIATWLSGYLNMVKTWVDKILDNEHYDVDKVKIIGLIDEWILWLEETKLKIMKMKDVDPEGDK
Ga0211576_1000141021F013153GGAMKKLLEKWYRFKTKYLDYLVMIILALSMFFMGCDDRVKVEEERNIIVTMLRIDRIEIVDNLWVTPAPIWGHLEAEDVPVERLVVHWWSNMYWNENDSSGYYKLLPNKRNRAVWRDEFGNRDTVDVNVDTLRWITDSYSRVDSLGYFYNTLTPVRPMQGHNLMGSFMMLYWSINNTLIDSQEIFLMD
Ga0211576_100014105F087901GAGMKTLKLNIDDKVYMLLKSVSSKNFIIDGFLKRIIRCIDNGIEEYDMEFKFQKDQKRSK
Ga0211576_100014106F026586GGAGMKSISRYHILIAVVALLISILTKGCTTSPSGAFEHSTTIYYLDDKFHEDIPEEFIFKTWGYRIIDAVGREHTYRTKVDIPHQRKGTKWCTIHRQSEVIKAHYDPKGDGYFYWVQRHKKSL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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