NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10001055

Scaffold Ga0211576_10001055


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10001055 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21759
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027527Metagenome / Metatranscriptome194Y
F068896Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_1000105517F068896AGGAGMIAECMLFLASFSPPLVGTETDFINKHLECREEIPQKMKQYSSLYLQHFDFENIDTAVRIGWCESRGKDTAYRDDNSDSGVMQFVPWTWNWVAEEYDLPRWNEWVILYHGQPYTGPTSKTNFGFEFKKVQFTPYYNILFASILAEDIYSRTQWRDWSSSEWCWSDVIKWEKKWKKEENM
Ga0211576_1000105524F027527AGGMAQSITEVLLGTGNLFTALESDLNGGSPSATFPANPSAGPDTTYWTDIGYSEGGFSLEYDKTFEDVMVAEEIDPIKTIKTAQEVRVTGELAQASLSNLKLAMAGGTVSADTPSSGYSTLVPPTTDSFLEYGLLLRVNAPGTDEAGTGKVRDIHIPRAVNIGAFSMVHAKAPQKVTITVEYKVLKPNSDAPFSNIFKVIDTV
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