Scaffold Ga0211576_10000986

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10000986
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22593
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044515	Metagenome / Metatranscriptome	154	Y
F047691	Metagenome / Metatranscriptome	149	Y
F047972	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000098622	F047972	GAG	MRFVEFSPNMMVDRYVIVLKNLIGRASAKKVPAKMNWAGLNKILKSNDASLMADYEMFKAMYDTSPAIQNLVKNFNADGIELNVPGAQDDETPADGATDAQAAVDATAASAAPQQLAQQ
Ga0211576_1000098627	F044515	GAG	MIFGFLLSVFGLHTEAHNLVYLGISIMAVVCAVWWFWVMFVIKDMFIRVERAADKMVEVKVELVGIKGLIRKLFDRSNDK
Ga0211576_100009868	F047691	N/A	MKCEQGDLAKIIFSLNEKNIGKIVLVDKYIGKFNAGGRFDFRGIACVVPVADHYWWVSGEGLSNMFGDTPKAYIADSWLEPLRPDTQKTSQKEKIPYQEVA