Scaffold Ga0211576_10000914

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10000914
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23643
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (63.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016740	Metagenome / Metatranscriptome	245	Y
F051472	Metagenome	144	N
F074038	Metagenome	120	Y
F081771	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000091419	F051472	GGA	MPKTVPKFKEPLIFGYYIHARPELGEIKWQWSDQRKQFWEDWIPKDKDLIIHTKLSTDHEQLFRDAFWQDMEDEIRNTKDSLNFRARERRAKKKVTANQGSHSPS
Ga0211576_1000091424	F016740	N/A	MDYILATEHLLRKYRERKEALTQTLASGSVENFEQYQRIVGEIAGLSFCEQEIQTLHSNMEDAND
Ga0211576_100009145	F081771	AGGAG	MSDFNMMGAVGYRISHTDESQDYPIATIKIAFKMPEGENGRIEMFHVHEALRRMIDKKQISFDLTLPPQPPQEPSI
Ga0211576_100009147	F074038	AGGAG	MDIEKIQQQVADLKNNVSLLEHATISDFNSDLVTSLHRITDVLDDLQPRVIDPADLSKEAEQKVLNTLSELTARVDGIESREWTESFIEETVEVAIRNTDFDADIDVYVK