Scaffold Ga0211576

Basic Information
Taxon OID	3300020438 Open in IMG/M
Scaffold ID	Ga0211576_10000781 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020438 Open in IMG/M

Scaffold ID

Ga0211576_10000781 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26082
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26082

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_133
Coordinates	Lat. (^o)	35.4118	Long. (^o)	-127.7122	Alt. (m)	Depth (m)	45
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_133

Coordinates

Lat. (^o)

35.4118

Long. (^o)

-127.7122

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023961	Metagenome / Metatranscriptome	208	Y
F037431	Metagenome / Metatranscriptome	168	Y
F094092	Metagenome	106	N
F101484	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000078113	F094092	AGGAG	MLKPLDSHKPATSSTFLPHERPEVLRKLNEIEFSESDRLSDNYKDLDWFGFEAISIYERDDNIIGFSSIIHRPEYFAKKECRILNRYYESEEMRRTSKIIGDDHVCEMIMQQLDIAKKIGFEKAFISRCRSPRHLKKFMENVSTRTGTKWHMEDEKIAVCNPNFDECWQYKASTDLC
Ga0211576_1000078117	F023961	N/A	MIGCPRQKQCIHGRTQMPNYIETDYKTDPAFFRGYIKPDLWEDSNELYKEYMSWENNKFFVQIVKQFDKPLLRQIKNIWNYMGIRPKEWRCNFFRVLPGGNLPLHKDTMSKISVVIPLTKMTGELYFDDGTEVLYHNMTIINTQVPHGVRPPTEERIVFHMGIHDTYFEEVKIGHNS
Ga0211576_1000078119	F037431	N/A	LRPVTQGHITMPKYKTDRPFSQEELKKMDVIHDPATKLFEDQYDDSYVVEEFINETEREILSTFFKENFEKIGYDINGHVLHITFPMLIPAISEIVRPKIYEHFGQDVIFYSDVAQDDPMSVGDQFFKSIKPYGLHTDAVTHLNGYRPFKDIIIPIDLDSISASSYVTFNQRYRGRATHFMRGRDIGSFANYANVIRHQSYEEYGVDKIDYGEKDHATLEKIMPEHIPMSIYHGLTIEKILPWKPKCAIIHDASVLHAPADYRKQGSGYKIGLTLHLMKKDETYNNRLEGYATPFSRYTRNLVKL
Ga0211576_100007818	F101484	GGAG	MTELKKLMKFRENIHHFKKDDPGRDKIDQILKDAHELVPHKNNLWAYNIDVYGPEHAQEKEQVAMQTVSGYDKRAFAPGGKYHGDNEKLRKIYHKWQKGRETLRDDPSRENRIAMGKVEGFSFNEQVTAPYLLVYYQIPGFPTEKQRQKNYKRLLIDYTDNEQWMISASMHGFGTTMLAAEQGLHASFCKCYYHDIQNFTNILAPLRHGFKNIAFLLGIGHKDGELPYYKNRNVPDYDEIVTWK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211576_10000781

Overview

Ecosystem & Geography

Associated Families

Sequences