Scaffold Ga0211576_10000674

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10000674
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28193
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (95.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022978	Metagenome / Metatranscriptome	212	Y
F038651	Metagenome / Metatranscriptome	165	N
F068785	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000067413	F068785	AGGAG	MSAYLCNPEDFALLAAYALKPGAPRHFVNLDQKEYIDIVIAADIATILAKENIKSLEALYPKYGTAGGFLCGTLEEFLAEVKLAAKARYDYNDLVKVKEILHCFDYQSCEHPEYRQSDAYHLVRCIKDQLLSEFAYKYELAQEAA
Ga0211576_1000067436	F022978	GGA	MLEFAESVLKEVRKLQEDSEALVLNGTITDMERYRFLMGRLEGIKLVDQIIRDKLDKHSEEF
Ga0211576_100006747	F038651	GAGG	MIKRIKALLLGQKPIDEDQILQLYMDAAKHIKPAPLFAKDFVRLVEAKHGIVGKYKVEPVNYGE