Scaffold Ga0211576_10000053

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10000053
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93678
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (31.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F042280	Metagenome / Metatranscriptome	158	Y
F072343	Metagenome / Metatranscriptome	121	Y
F082523	Metagenome	113	Y
F092065	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000005324	F029108	N/A	MNMNKYLIGKKKLGKGMRGSKGGQATPTGAFGGKSKFNKKRLDNSK
Ga0211576_1000005325	F072343	AGG	MTHIRREIDEILDQINEIITTSEMQGGMDDEDKAMIEHLERTINLKTDNGKRAKGMWTESPEFNYIK
Ga0211576_1000005334	F092065	GGAG	MQEIINKIYERMEYCAYAQTNDQAEEQAYILELSCLNEILDQIETFPWDNEEVN
Ga0211576_1000005345	F042280	AGGAG	MKITNKWDETFEIKVGDWVGFKSDIEQEGKVKSIHRSRNTLIVENDYGFYGDYIGGDTEALISFEDAWELSSFECS
Ga0211576_1000005357	F082523	N/A	MSGEAHTAFFRRTNKTKESNSQLCKIFERIILASPVKKHMKFYPDHVGQVHLYEKGGENVPKWMEKDLRFDGTFELMISAYESWYEDADLYEGEREDSFLSLAKKFADLYSLNYYEGGVYELEDELEKKGLTESKK