Scaffold Ga0211539_10131114

Overview

Basic Information

• Taxon OID: 3300020437
• Scaffold ID: Ga0211539_10131114
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1017
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5
  • Long. (^o): 70.0
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039872	Metagenome	163	Y
F102838	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_101311141	F102838	N/A	VDVKETDGTDVTYTVSAGDILRVDPSGWAFASNGYIRITSDGNEAADRKLILHFRHS
Ga0211539_101311142	F039872	AGGAGG	MSTDIGGLVDRVYREYLEPMDDLVSYTTLSTGINDSVTSVVFEGDMLSIEEEDALDKGTVIEINQELMICTDLNSVTNTITVKRGARGTTASAHTAGDIIKIAPPFPRKNVFDAVKDQINNLFPTLFAVETQSVTTGDGYTLLGAYNDVGTHNYIVSIIGAISQYTDFSSNSDTTGVKFSNVACSLVELPNPFTYNDSDGVSRTFTYSSGPSVVHAVQFSGINTGHTAFVTFKKKFIEPTAETDTLTSIGLEQEYEPIIMAGVAAQMLAGRDIPAATT