Scaffold Ga0211539_10004753

Overview

Basic Information

• Taxon OID: 3300020437
• Scaffold ID: Ga0211539_10004753
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5576
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5
  • Long. (^o): 70.0
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F038722	Metagenome	165	N
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_1000475311	F101298	N/A	MTQHDRDFQKVLQALTVFDKKLSTLEDVVRQLAEANVNYATSQQELNKEQSALNKDLGEGIKMLGENLAQVIEFLQKIGGKN
Ga0211539_1000475314	F038722	AGGAG	MNITESRDEAFEAIAEMLRSNTKKTKIASKLAADYCVSDKTVYKWITRVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKTDKDDELRRKIGAILNNTYLKKITFN
Ga0211539_100047539	F014114	N/A	MKEYKATDPEMIQAQKDLAKMSNLSDRVITNDKDLFEELSTIQSKLCQISELKSHFLQRYEDILDEQHRLETQLCVFQHEMLHSFELVFRYYKTKKKGFK