Scaffold Ga0211539_10002339

Overview

Basic Information

• Taxon OID: 3300020437
• Scaffold ID: Ga0211539_10002339
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7904
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5
  • Long. (^o): 70.0
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064807	Metagenome / Metatranscriptome	128	Y
F071303	Metagenome	122	N
F078604	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_100023391	F064807	GAG	MKKWIQTLSNKDRESFLEFCKKASSPIQIYLFSRFLGFQGTVVECNEWSTKEFKKRNFNVVLEAEIDNMQIDINKLRDAIDMGIVKQDM
Ga0211539_1000233913	F078604	AGGAG	MTNENFYIISTNATIKSLPTKLDKAFKKDLVTDKGDLKPHVEKIIDNVFYYGKQCINATIPTLFIEIEYKDTNKDIYLISHEVFLYSEDMPTLKDLENYKSKFDFNFSSQVEPEVYEIVEAFHLGYGCECLSSGDY
Ga0211539_100023397	F071303	N/A	MVKLVNLNRRLKTPADKVAFQGKTPANKTTGPNTTGALQDPWRGTLDHNPLNDDFYQSSYTFQSQVPEVQERLEGLQFEYTNAFEPGNNEFARNFLDKYTAARGGFDSAEDKGLIEGDRIVRPENLAQLSAQPATGGSAIQDPNVAGKFPSQEVKV