Scaffold Ga0211539_10000235

Overview

Basic Information

• Taxon OID: 3300020437
• Scaffold ID: Ga0211539_10000235
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20282
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5
  • Long. (^o): 70.0
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F001724	Metagenome / Metatranscriptome	645	Y
F015078	Metagenome	257	Y
F063770	Metagenome	129	Y
F085580	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_1000023528	F001479	GGAGG	MTREMLFLCDVLEDWCEKNNFPHRCASDLLHNADTKGRLTGNQAYWLESFISTWDIVNQN
Ga0211539_100002353	F001724	GAG	MSIIQKNPMEKEKPKDISEKQKQLEDDKPDYQEKISFLISTVAQSFILAWCLIVLSLGYIKLPNRLFGIDIPDQPRVDSTFAAGLLGNILAGMGVSVNAAQGAKKKKKEDGNGNIGNSSGGVSTIIIKQPLEIVTSKPDVIKVDPNSSKK
Ga0211539_1000023532	F063770	AGGTGG	MTYPNPISSPYVLFKAMEQPKTLKEIKAERRAIIENAWFNQEITDDQLEAEYEALGIVNKSNKLPQ
Ga0211539_1000023535	F015078	AGGAG	MTKTTEQKFKLHANFWFEISTQDLRDLFCTMGQGSGYWAHSVTVGDIEEDEDGYYLPNQDYEHEGCCAWVKDLTLDTKIRIEDIEEDKHELKVAYVIKAIENIVSGKTNLNTYDCSKVFEAFKDNDLGLIDASIADSILQITTYNTLVYG
Ga0211539_1000023537	F085580	AGAAG	MIIKSNSTFSLVQTITDQIFLIVNGTYSQSVLRVWHISQKQDALYEWNRITS