Scaffold Ga0211708_10070943

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10070943
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1350
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F047373	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100709432	F005620	AGGA	VTEDQTFAKQIETFKTFCRNNRLRLKEDGDGLPVARAIGRFKSDQFFCNFKDGTIGVYVTRETQRQFTYLNKKLIKMGCIPTQLGDFEASYDLEWMNIPPVAKLLKIKKGAAKVKDPKWLRENG
Ga0211708_100709435	F047373	N/A	ITNPKIEVGDVEYSKLSHVLRFTVASNSNAIQMIEDICGRTDMTMEEVAAEMGKLLQTAITMNYHRGGRRIKYD