NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10055442

Scaffold Ga0211708_10055442


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10055442 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1527
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019908Metagenome227Y
F074971Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0211708_100554421F019908AGGAMKDKKPKYRVHVWKADEDNTELVFEAPAKPTLEQLYKLIGCERVERVSGYDTSVSNRTFDIWIDEEGKFNSPVKNLRATNAWFRWMHRTGYMNIPGDHITGTTVCYKKMSQ
Ga0211708_100554423F074971GGAGGMTKFYITYFAKKYNTFITRKGSYDKPDGTPSQKGAYVSKKGEPVLNYWDLEADGWRNATGKVKIKTI

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