NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211708_10032760

Scaffold Ga0211708_10032760


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10032760 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1983
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015532Metagenome / Metatranscriptome254Y
F023621Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0211708_100327601F015532GAGGMSLIKENKVRKEIPNRMMSATFALPIDGRRVVGILDYTASESGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVI
Ga0211708_100327603F023621AGGAGMDEKWRNHMSLMERRVENIMKAMKKAKDYEMKSIWNSKLKELFEVRGRKAFERLENQARMVH

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