NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211708_10021900

Scaffold Ga0211708_10021900


Overview

Basic Information
Taxon OID3300020436 Open in IMG/M
Scaffold IDGa0211708_10021900 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2427
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002768Metagenome / Metatranscriptome531Y
F004376Metagenome / Metatranscriptome441Y
F026744Metagenome197N

Sequences

Protein IDFamilyRBSSequence
Ga0211708_100219002F026744GGAGMKAKKKNWTKEENKLAYMLAWVCCHVDEDCPSEYRTRHLRHHLKEAIDYLEKSGWYEYNQKTNKDKI
Ga0211708_100219005F002768GAGMKVKTSWWSLTIQDYPNFKPNETDLEHIAKCIIDGYDQGQLVQETEDEEEV
Ga0211708_100219006F004376GAGMKCLDCGCDEGTLLKEFQEEPNKNWSWYELSEMTAVCVSCGSENIKEEQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.