Scaffold Ga0211708_10014637

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10014637
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2950
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F012285	Metagenome	282	Y
F013522	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100146373	F012285	AGGAG	MYHNDSKSFLLFGKQMNQIIAILQMVSDKNPDIQKLNEFIQYLKDMIPYEDMLDSFVFGDQETMPDEVRPVGSKDAMTLEEMMDDLQLRFLDARDKDNGKN
Ga0211708_100146376	F013522	GGA	MKKENILKRIEQLSKLCEETEPTFNEMMNMDKLFSQDLISVDNMYLQVEQDEYSPQDLIDIMKECNWIWKKRHKIKEVGWNEYNNIDRKIEESLRGGRKIEAIKTYRQHKIDNGGDCGLKEAKEHIDKLVIKMGLD
Ga0211708_100146377	F002249	N/A	MKYKSYPYTVPINHKALQHTKIKELQVRMMKWVSWYKDEKIRNRTVDKDKWQHRFQFTLRCQERAGKLTKGELQQLNHYWKTYEEGKHT