Scaffold Ga0211708_10008724

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10008724
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3781
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100087245	F101298	AGGAG	MDRDFQKVLQALTAFDKKLSLLEDVVKQLAEANVNYATSQQELNKEQSELNKDLGQGIKMLGDNLAEVIQFLQKIGGNN
Ga0211708_100087247	F056669	N/A	MSLIKSYILSIEEMGYDPYHLNKLSSEEWDNLLTKALKSDKKLYETLILTRCKLKLEKGI
Ga0211708_100087249	F014114	N/A	MLSKSSLMSLKRLLDLILVIRSQTMKEYKATDPEMVQAQKDLAKMSNLSDRVITNDKDLFDELATIQRKLCQISELKAHFLQRYEDILDEQHQIETRLAIFQNEMLHSFELCFRYYKTKKKGFK