Scaffold Ga0211708_10007151

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10007151
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4171
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003612	Metagenome	477	Y
F058282	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100071511	F058282	AGGAGG	MAYDSSIPAGGPGNFVSPNLAIEHEGVRVDFITVDYISAMNAEVTHSLASANTAGLKLAFEAIQNQGVNILGAGALGNSNT
Ga0211708_100071512	F003612	N/A	MATPNNFQITKSIGTTDNFAGAEVDFFHITFITSDGSTVLDVRTELGYDETLHNVQRAILQRGTILYQRIEDGATGRMDICMERSGWTASTLQTAIRALGTSVGTNNKDVSQSTVTETELKLDNS