Scaffold Ga0211708_10006957

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211708_10006957

Scaffold Ga0211708_10006957

Overview

Basic Information
Taxon OID	3300020436 Open in IMG/M
Scaffold ID	Ga0211708_10006957 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4222
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_072
Coordinates	Lat. (^o)	-8.7788	Long. (^o)	-17.9098	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018189	Metagenome	236	Y
F036270	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100069573	F018189	GAGG	MELSKEQMEKVIYELECNYNSKIFDDENLIIIINLFKNYLNGGETK
Ga0211708_100069576	F036270	GGAGG	MHIESTDKQGVFKACKEGHKLLELINDMGWDYDRFSSSGQETYDKICVILGTVEEDENEN

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