Scaffold Ga0211708_10003495

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10003495
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5867
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F013377	Metagenome	272	N
F058518	Metagenome	135	Y
F081883	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_1000349514	F013377	AGGA	MTKKILKHWALFYKHGERQFISAPTRKELDSAIFAGAYAPSPNNVTYYVEYERDIKDTQYNQVTEV
Ga0211708_1000349515	F010471	AGGAG	MIQLTLATNNEAHPEYNSNEIAQILGLLPLWVAEHIGNDDGTDLVQFMEDRYGFGKLYKFEGEVNEDGDYVSKDDANLPYMGRMITKDGYAYFYEYAIVALPQPDGKHFITRMD
Ga0211708_1000349517	F058518	AGAAGG	MKYREIVIAAEDLECDQIDTIYKAIKNHILDVGIATPKTLTGFTWRLDVRMRMDNYDT
Ga0211708_1000349518	F081883	GAGG	MTPRIEKIFNLIYYSDFDEAEIKQLAIGLLGMTLNDMAWHQTSDTVSSYKLDDEIELDFDEGDNLR