Scaffold Ga0211708_10001086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211708_10001086

Scaffold Ga0211708_10001086

Overview

Basic Information
Taxon OID	3300020436 Open in IMG/M
Scaffold ID	Ga0211708_10001086 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10119
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_072
Coordinates	Lat. (^o)	-8.7788	Long. (^o)	-17.9098	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046692	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100010864	F046692	AGGAGG	MNEPAISNEATGIYEISLVPIEQIPVIWHKVESFLKKSANRSGNRTNIENIYYELVNNQTQLWIIFDTGSLNIIGVQITLFNTYPTGKKMLNLEHTSGKQMQDWVEQGIDIMIKFAKSNGCEGIEGMGRHGQWNWVKNKKGWKKPATFYEYIFEDDK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.