Scaffold Ga0211708_10000603

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10000603
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13373
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019554	Metagenome / Metatranscriptome	229	N
F021405	Metagenome	219	N
F094416	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_1000060312	F094416	AGG	MFEVLTALFIILSVCLGIALLRSINRLSFYEDMQEDMYGRFTTLGNSIRDVLSREIYSNDPVIRNFVSQLQDIEYYLQQLDENYKFNTLGEEVEDES
Ga0211708_1000060313	F019554	GAGG	MSLEKLKDISLFEGKSLDEIFNVIYQQSLEERDEAMSTFKKFKDMIGDTEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLENENKESVNANDILDLLDKEGIAPKRFIPESDDEEQSQTKENDPQSGGQSVVEFPQLKKKV
Ga0211708_100006033	F021405	AGGAG	MSEQVEEIIDIEEDRLKYRVEYIRENLIQLSDKLREKIPQGLTDQDLTQDDTFKNWVVVNSIYDASMKDETSNGFNRMLYFLYDKCRGNIARIVSNYDINIKFNTAGQLEDIKLIVLEEEEGDE