Scaffold Ga0211708_10000098

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10000098
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35998
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (33.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066764	Metagenome	126	Y
F071186	Metagenome	122	Y
F091879	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_1000009823	F091879	GAG	MSYPELMALRYFNVQSGNGFSVDKNLKGYNPTREAYAVGGATDSVEMVDNDLLSYNNFEKIMKLNIEFMERQPDTTMQVIGAWINDDNYVYIEVADIVFDREEAIALGRERGEEAIWDFDNDCEIKLT
Ga0211708_1000009833	F071186	N/A	MSNVNTSKTYWDNEGKYQEQYNAAWKALIPVSGEAKDGWPEALRAISRIGYDYYNNGFCNLWRADEEYDSDGSYYDVYRMDSYYRDMVEYLAYEIPRDLHKELQEFLLDAQGYGNWSNQASIIDRIIDHIMEGIIKDGLLEEELVS
Ga0211708_1000009842	F066764	GGA	MNTDIPRILENIRISYEYEMGEYLEPDSRRRHKVELRNALVNAAKPYGTCAQLATMVGKANHTTTIHCMKEHEVYHNFSPQYRRNYAKALEVVEKFARRHQLLPRLNGQRGGASSLESEIRTINMSIAALQSRRDRMIESLESSRQIAKFDNSSTI