NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211639_10308505

Scaffold Ga0211639_10308505


Overview

Basic Information
Taxon OID3300020435 Open in IMG/M
Scaffold IDGa0211639_10308505 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)653
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9727Long. (o)-100.6633Alt. (m)Depth (m)350
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F056063Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211639_103085051F000245AGGAMKTFSRLKEGRLDDKMDKAVSDEIKKRKLARFPVNATDDYKMKNKKNLAFKFPTPSGEMMFHVYLRKMAPSKGQPKGVMAFNYDIEDK
Ga0211639_103085052F056063GAGMKSLIQHLNERVFKSSLSDMLFQPKITEYNRLMIPISSSIYKRIWPDNIRATVFHTTDNEGVKKIAKLEGKKTQISAFFSMQSRYMEVGIATSGGVHAVLEMDADVLLSAKGDVMSY
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