Scaffold Ga0211639_10144789

Overview

Basic Information

• Taxon OID: 3300020435
• Scaffold ID: Ga0211639_10144789
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 994
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9727
  • Long. (^o): -100.6633
  • Depth (m): 350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F007052	Metagenome / Metatranscriptome	359	Y
F012279	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211639_101447891	F000615	N/A	VSGSERPENIMCRIRCFYECSDGKLSCAEMIMSYEEDIAGFVKHWKTGGRMVITEHYEIG
Ga0211639_101447892	F007052	AGG	MENKNETYFVARLFKKGKFLSSEIFESLEESRVWGMKESKRLISHLEMLRLGVDDICVKIDKHFFVYESSLEELMKNSKKVI
Ga0211639_101447893	F012279	AGG	MTERERVEGMLIENRLSDLKSLMSTLTAAEETVDTLRDRKWILVEELKELGHNFKTTCEGMDIVLSAPPSMRF