Scaffold Ga0211639_10142301

Overview

Basic Information

• Taxon OID: 3300020435
• Scaffold ID: Ga0211639_10142301
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9727
  • Long. (^o): -100.6633
  • Depth (m): 350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F037260	Metagenome	168	Y
F040145	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211639_101423013	F040145	GAGG	MTKKKWLQERVFVDMYGRPYNMSDVPMTHMKRSEAFAKRKLSKKEISYLYKKDQTTIIIEGC
Ga0211639_101423014	F037260	AGGA	MAKKKKTIPFHIAHSYKQWTSDQGYKFWARDEEDAKLYLEVIGAHLGSLKEVEVKSV
Ga0211639_101423015	F003091	AGGAG	MSMLPRKPITKPGEGKQRQKYISQERYLEERYEISLTQKGPKRLEGESYEDFCIRRKAENGLLKEYLRGVWIENDDD