Scaffold Ga0211639_10037374

Overview

Basic Information

• Taxon OID: 3300020435
• Scaffold ID: Ga0211639_10037374
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2167
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9727
  • Long. (^o): -100.6633
  • Depth (m): 350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039346	Metagenome / Metatranscriptome	164	Y
F044731	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211639_100373745	F044731	GAG	MTLEEIYRKYEKLTLEICTGEKTHDNTLECAGAMMGQAMKLYKLVLSPEDFDALMQIISQASGLDGKGFDKDDFDSGTLH
Ga0211639_100373747	F039346	AGGAG	MFTSFVITLIECLEIAFITLLISQTSVNKQLIYKYGGLGLIGGLLSAYYLHDMLENYEWLMYAILSSLFFYLFVKNKDIQKHIKEHVESITGASSIVLFSTAFFIYGRESFEIFSNLFLNPDASWSAAICAAIVAVIIYMFARDSKYTSYIFKFGYWAYLGFALWFGYEALEHLHIL