NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211639_10037374

Scaffold Ga0211639_10037374


Overview

Basic Information
Taxon OID3300020435 Open in IMG/M
Scaffold IDGa0211639_10037374 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2167
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9727Long. (o)-100.6633Alt. (m)Depth (m)350
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039346Metagenome / Metatranscriptome164Y
F044731Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0211639_100373745F044731GAGMTLEEIYRKYEKLTLEICTGEKTHDNTLECAGAMMGQAMKLYKLVLSPEDFDALMQIISQASGLDGKGFDKDDFDSGTLH
Ga0211639_100373747F039346AGGAGMFTSFVITLIECLEIAFITLLISQTSVNKQLIYKYGGLGLIGGLLSAYYLHDMLENYEWLMYAILSSLFFYLFVKNKDIQKHIKEHVESITGASSIVLFSTAFFIYGRESFEIFSNLFLNPDASWSAAICAAIVAVIIYMFARDSKYTSYIFKFGYWAYLGFALWFGYEALEHLHIL

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