Scaffold Ga0211670_10226988

Overview

Basic Information

• Taxon OID: 3300020434
• Scaffold ID: Ga0211670_10226988
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 760
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_098
• Coordinates
  • Lat. (^o): -25.8339
  • Long. (^o): -111.8078
  • Depth (m): 488

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012510	Metagenome	280	Y
F017398	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211670_102269881	F017398	N/A	DPAKAGKKMSLIIADYIDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHASGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTATREADWVKTDVIPILGRIPHKHWKSAAELSTYITQVADAEVRTFGGWARKK
Ga0211670_102269882	F012510	AGG	MKTFKEHLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDDAKEFASIRKWQEKK