Scaffold Ga0211670_10110900

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211670_10110900

Scaffold Ga0211670_10110900

Overview

Basic Information
Taxon OID	3300020434 Open in IMG/M
Scaffold ID	Ga0211670_10110900 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1066
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_098
Coordinates	Lat. (^o)	-25.8339	Long. (^o)	-111.8078	Alt. (m)		Depth (m)	488
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F015221	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211670_101109004	F000319	N/A	MFKDLILIILGATVSCAYFYWQSYKDKKEIKKQERLNAIRKF
Ga0211670_101109005	F015221	N/A	HLIVKVRKYQNTEPYFSLYTVPAIADETKAIETVEKLNSLAELEKKDGWQEEYYSVSMTL

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