NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211670_10068578

Scaffold Ga0211670_10068578


Overview

Basic Information
Taxon OID3300020434 Open in IMG/M
Scaffold IDGa0211670_10068578 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1335
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_098
CoordinatesLat. (o)-25.8339Long. (o)-111.8078Alt. (m)Depth (m)488
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025390Metagenome / Metatranscriptome202N
F047120Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0211670_100685782F047120AGGAGMFALKTQQLTASGQVTTKVSAGSNTLSAPARVLGLTVQCGATEGKIDLVDDGASGTVKFTQVTPAIKAGAGDMLQIDFPEMGLKFDTDLYVYFNHATKVNVIYA
Ga0211670_100685783F025390N/AAITRTNTSNNGRGSPGWYLSQTASTQTAAPVADAVGGWLQLDEVNATNDAYNQINTFTAFQLSTSMNSGFEARVAVEDVSVTEMVIGFVDTDVTSGVVNITDGLYFSNFSDPDSITAGTSLYLHCEKNGTITSSDALVDPYTGSTFVIEDGALQTASATQLATPSNSFIAGFNIVPQGSNGNVNTAVIQAYLGPVGKQPLPVASIATTNLPDDLALGLMMGTKNNTTTAAIMWVDYVKAISSRSFGSSTTK
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