Scaffold Ga0211670_10052111

Overview

Basic Information

• Taxon OID: 3300020434
• Scaffold ID: Ga0211670_10052111
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_098
• Coordinates
  • Lat. (^o): -25.8339
  • Long. (^o): -111.8078
  • Depth (m): 488

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018198	Metagenome	236	Y
F034338	Metagenome / Metatranscriptome	175	Y
F067095	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211670_100521112	F034338	N/A	MTNYDVDARERQERCERFEHAINCMDIAPVAMMSFERIAIEHKVSLVELLQTMLLDALDRELTKGQELDYVDGLYG
Ga0211670_100521115	F018198	N/A	MLGFIYLDIYQLKNIMSEREVQIFIDKKEILYSHQNIVQAIDAFLPYLTNDDLTELSKTCITMLDHRRQKEYLAHLEAKNIPIQSNRHDT
Ga0211670_100521116	F067095	AGGAG	MKLLNISIRVTLYTFLGNTLVFLGDRFCQYSLDLEGIGWMRSSLLLWSVGVWFYSASNKYAWIHISGHIPVKKYNE