Scaffold Ga0211565_10218003

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10218003
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 830
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025305	Metagenome / Metatranscriptome	202	Y
F025518	Metagenome / Metatranscriptome	201	Y
F044551	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_102180031	F025305	N/A	MMNMYKFPYRFEPMPEIQDKLNLAWFDEHYGEERMKEHIRKHKLKSHQYKCYVNYWWLKDQRKS
Ga0211565_102180033	F025518	N/A	MIEENIPLVFNTKTSLKEEAKRFLPTVREFYPNLDEKLIDRIAKYCVVYFSWNEARLNKASIRQAINDFEEVFDIELV
Ga0211565_102180034	F044551	N/A	MKPYILYIVIGLVFMTLIRTTLKIDRSERNQRLYDELCKVDQAYCTH