Scaffold Ga0211565_10142427

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10142427
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1039
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028358	Metagenome / Metatranscriptome	192	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_101424272	F092017	AGGAG	MSMLLVLKEGRNLDIESIPDQPLEPSFPIVNATIKANDGLFALGAFGQAIFAAELVEEGA
Ga0211565_101424274	F028358	N/A	LLDLNNELVKGTVDIAGAIIPRDRNVAGIDIDTIVTPFGSIGMMVVDPDILPDNTAFILDLAYIQPVFTNIPGFGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS