Scaffold Ga0211565_10074280

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10074280
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F023367	Metagenome / Metatranscriptome	210	N
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_100742802	F009691	AGGAGG	MPSTLNSKDYVTFARRFVKDLVEDMEIEELRSIVSDRIHQEIQEQEDTFGQEGAFEEMMGWSEDIFLLVAEDFDLEFEGA
Ga0211565_100742803	F023367	AGGAG	MKKFVFTEKFISYADVEIYAESEENARLQFQNGNYQYYDVSDFTDGHELIEVKEVEIDA
Ga0211565_100742806	F030123	GAGG	MSGISTDGMDKWLDDAYPDLDRRKANMIYEIASLIKDDPDTAPVLIEELVEIMFDEQIDHLEDVIVNHFGVEVYPE