NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10053180

Scaffold Ga0211565_10053180


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10053180 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1728
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F020546Metagenome / Metatranscriptome223Y
F096162Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211565_100531804F096162GGAGMTTTELTEDQLIELKSEFVEFKLNEMSFAELQDYVRGMMLLDIDPDPEILKDTIDEYDDFLYDILVPYVKGEENSYEILQEYIHERHENDWIDDV
Ga0211565_100531805F001479AGGAGMSKEMLFLCDVYDAWLSKNKLPHRCASEILYGADTMNKLTVNQSYWLESFISTWDVIAEN
Ga0211565_100531807F020546GGAGGMTTKTDPNQNYTINEFYIKVKGDYGKEKTVRVNDMGDKLLSLITDLGWEYQRMSRSGQEVFDEIHQLLGTITENEVYMEI

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