Scaffold Ga0211565_10053180

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10053180
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1728
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F020546	Metagenome / Metatranscriptome	223	Y
F096162	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_100531804	F096162	GGAG	MTTTELTEDQLIELKSEFVEFKLNEMSFAELQDYVRGMMLLDIDPDPEILKDTIDEYDDFLYDILVPYVKGEENSYEILQEYIHERHENDWIDDV
Ga0211565_100531805	F001479	AGGAG	MSKEMLFLCDVYDAWLSKNKLPHRCASEILYGADTMNKLTVNQSYWLESFISTWDVIAEN
Ga0211565_100531807	F020546	GGAGG	MTTKTDPNQNYTINEFYIKVKGDYGKEKTVRVNDMGDKLLSLITDLGWEYQRMSRSGQEVFDEIHQLLGTITENEVYMEI