Basic Information | |
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Taxon OID | 3300020433 Open in IMG/M |
Scaffold ID | Ga0211565_10022471 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2658 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_138 | |||||||
Coordinates | Lat. (o) | 6.3315 | Long. (o) | -102.9484 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001479 | Metagenome / Metatranscriptome | 687 | Y |
F040144 | Metagenome | 162 | Y |
F042934 | Metagenome | 157 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211565_1002247110 | F040144 | GGAGG | MNTTKPYLHEFYVTRKCTKYEYFTVKAESLEEAKYEAENGYDYYDFDWEEVDHETVEIEEQVIPIQQLALSL |
Ga0211565_100224717 | F001479 | AGGAG | MSKEMLFLCDVYTKWLEENELPHRCASELLYGKDTMNKLRINQIDWLQNFISTWDIIAEH |
Ga0211565_100224719 | F042934 | AGGAG | MRTELNDRDYVAFARKFVKETVDTMDIKELKDFVVNALHEDIQDAYDDLGQRGAFDDMQSWDGDVFDEVAKDFELELEEV |
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