NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211565_10017722

Scaffold Ga0211565_10017722


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10017722 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3000
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002883Metagenome / Metatranscriptome523Y
F039683Metagenome / Metatranscriptome163N
F099444Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211565_100177225F002883GGAMSTLHHEDLLLTIFEEVQEAFPYLDEEKQIEIANNRFQDMCLXLN
Ga0211565_100177226F039683N/AMNYDEILKCYEGETELHANTSFEFGLMNETYWCLFRDHDLLEYAVKXVTLKTKQLF
Ga0211565_100177227F099444GGAGMSYTKNETALLNFQNDISKLFDYVGEEDDQIPFSSLRKFEKYCIAFINAIEVEEDS

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