Scaffold Ga0211565_10014080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211565_10014080

Scaffold Ga0211565_10014080

Overview

Basic Information
Taxon OID	3300020433 Open in IMG/M
Scaffold ID	Ga0211565_10014080 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3378
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3315	Long. (^o)	-102.9484	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025518	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_100140804	F025518	N/A	MKLTHSTKTSLHDESRDFIATIKEFYPNIDEDTLDRVAKYCVVYSKGKDKKNIRQAINEWQSVFDTDLS

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