Scaffold Ga0211565_10012706

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10012706
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3568
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002883	Metagenome / Metatranscriptome	523	Y
F039683	Metagenome / Metatranscriptome	163	N
F099446	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_1001270610	F099446	GAG	MTTAFKKELYNEDLVYSSVVFGMGFWIDDQGLFLSAPEFQDGSLDIDNMGAVYDWENWDELSAHHLSHLMHVNQMCILKRDTQQIEYFSTLFTKEVKNV
Ga0211565_100127062	F039683	AGGAGG	MNYDEILKCYEGHTELHANTSFEFGLMNDLYWCLFRDHDLLEHAVPVQ
Ga0211565_100127064	F002883	GGAGG	MSTLHHEDLLWQIFEEVQEAFPYYDEEKQIEIANNRFQDMCQ