Scaffold Ga0211565_10001273

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10001273
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12245
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (62.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073646	Metagenome	120	Y
F078604	Metagenome	116	Y
F090494	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_1000127336	F078604	N/A	MSNDFYIISTNSYIKNVSKYLDMDFLKELKTSNNELKPHIKDLDINAIYYGKKCIKCTIPTLFIEIEYKDSNKDIYLIDHEVFLYEEDYPTMEALENYKNKFDFNFASQVDPEVYILIDAFHMGYGCMCLSSEGY
Ga0211565_1000127337	F090494	AGG	MSTKHTQTFKNFQSKHNLSYSNFFTFTNPKVLKNEKVSEIPTAILMLMNTPKACPSAGTCREVCLITSGNPIYLDNKIKCRIRRNNAFMSDYSIFLRYLVVNCFRHYAKHRGTDKVGFRLNGVSDYAWEDFSVKLTAEDTDYIKKAFNIYIEPIRYGSVIEAVQKAIDLNNNELLRNSVQFYDYTKRIDRNFDKCKKLNYHLTLSHGSKEDTFSKALELGLNYAAAFNLKKSQDLPKQFTYKGIKLNVIDGDITDYRPLDNNNKTNIVGLHFKIVVNKDNAKKLDFCIA
Ga0211565_100012739	F073646	GGAGG	MLQSEYLELAIELYDIYSAHDIHHRRWLTARELQRIKGGPGLIAKVKSKKGKMSELKPIFVDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSRRETSQEVTI