Scaffold Ga0211565_10000509

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10000509
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20411
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (52.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F021321	Metagenome / Metatranscriptome	219	Y
F025020	Metagenome / Metatranscriptome	203	Y
F031447	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_1000050916	F025020	N/A	MFLSTPAPAKSFSINTNSRDLDYQVSTKAILEIIRNNPQGMTLTEIAKAIDPNWQDMNCKRMFKQAIDPLCLRDEVRFTVSPSGKRVKYFPVRISKRWLVKELYNQFLNA
Ga0211565_1000050927	F012583	GAGG	MSLSQQIKVQEFDKYIMQGGDQSLPNIEDLCVYGFVMMDTEPDEETFNDVVIDVIKKLRRQLHV
Ga0211565_1000050931	F021321	GGAG	MNRDYMANMLFNINDVVETLQGHSINDDIIEEYDSSQFDEEPKSLMDIPKDWEGSSCSIGDCLLDLQTHINELHTYFSRLDHETSNFHK
Ga0211565_1000050934	F031447	AGGAGG	MPRQYVITGTKTLTYYKTVQATDIVDAHVKAHEPTDDPIDDWTLDFDEEYDEPIPMEVKHIEDEGEV