Scaffold Ga0211565_10000369

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10000369
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24099
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014155	Metagenome / Metatranscriptome	265	Y
F018738	Metagenome / Metatranscriptome	233	Y
F019666	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_1000036914	F019666	AGGAGG	MPHIYIPELAITQDEYDMIQDNQVPVDVFVANKIREDAMFVYVQESDARYKRAQNYEWSDELYSRRVPDNISENPDKRSTICDI
Ga0211565_1000036922	F014155	N/A	MNHQRFKFYKHSTEYYKQLHDSITHLQENCKEVTYTVLPSTINYKRTPKFIKRNNNTFKTHKKVM
Ga0211565_100003699	F018738	N/A	MTLYRYYCADTDCGKHFCFMAKDDMEAAYRADTMCKEWYDTTLKDVYLDKHNNPNRRYRPYDKEILSQQLG