Scaffold Ga0211565_10000323

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10000323
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26489
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (44.44%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F024809	Metagenome	204	Y
F025520	Metagenome	201	Y
F036270	Metagenome	170	Y
F038719	Metagenome	165	Y
F047122	Metagenome	150	Y
F057382	Metagenome	136	N
F058913	Metagenome	134	Y
F089953	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_1000032317	F025520	N/A	MTFDEKFYVLRVHSHIKNVSKFLDKNFIKELKNSDGTLKPHISDLNNTVTYYGKPCIKCTIPTLFIEIEYKTSDGLYLIEHDVFLYDDDYPTLKDLEAYKDKLSYGFASQVTQEIKDIVEAFHNGYGCMCLSEV
Ga0211565_1000032322	F089953	GGAG	MEDLINEEILENISENYQVYKVTSNCIPTKYVIRERSCFADQDLKLVRHNNMSFFPTLEDANQALSEIVQKRFEEQAQ
Ga0211565_1000032326	F036270	GGAGG	MYIENTHKQAEFRGDPDGHRLLELIDLMGFDYDRFSSSGQQTYDQICTILATVKEVKDEP
Ga0211565_1000032327	F058913	AGGA	MIKFVQFSPQLRRLKMNLTKEEAKWLDDKWNDFYYYFQVEDMFEKDQKIFQNIGKKLSEVKQ
Ga0211565_1000032331	F038719	N/A	MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARSAKDMWS
Ga0211565_1000032332	F024809	GGA	MIYSQKVLFDDWISRCPIDGVFVDEPVSEVQMNDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLTSQNRFEGA
Ga0211565_1000032338	F057382	AGGAGG	MSKNDLTKAELKQLISTIVFFQLGARTKELKTIKTKLKNQLKEMESNGKH
Ga0211565_1000032342	F012584	N/A	MKLKPVLPENVFKLSEDSLPTQSDVDPYGKIMVYRKDVGWSIIQLTDVIQFLAMKHTHWTFTPETP
Ga0211565_1000032344	F006793	N/A	MTNYRSTNEEKEQRINYAADQLAKGERSMVIVKKLVKRYNVSPQQARDYVREARKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTTIDQMGSWDDAYNNHLFKNFSEAKKKVKHSDLDALDNDLPEGEISPF
Ga0211565_1000032347	F047122	GAGG	VKCPKCNKKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEVDKQDLGQHSKQKKKEYYRKVLAELIEDLEGRTYLDKEKGEKFRIWEGV