NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211565_10000323

Scaffold Ga0211565_10000323


Overview

Basic Information
Taxon OID3300020433 Open in IMG/M
Scaffold IDGa0211565_10000323 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26489
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (44.44%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3315Long. (o)-102.9484Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F012584Metagenome279Y
F024809Metagenome204Y
F025520Metagenome201Y
F036270Metagenome170Y
F038719Metagenome165Y
F047122Metagenome150Y
F057382Metagenome136N
F058913Metagenome134Y
F089953Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211565_1000032317F025520N/AMTFDEKFYVLRVHSHIKNVSKFLDKNFIKELKNSDGTLKPHISDLNNTVTYYGKPCIKCTIPTLFIEIEYKTSDGLYLIEHDVFLYDDDYPTLKDLEAYKDKLSYGFASQVTQEIKDIVEAFHNGYGCMCLSEV
Ga0211565_1000032322F089953GGAGMEDLINEEILENISENYQVYKVTSNCIPTKYVIRERSCFADQDLKLVRHNNMSFFPTLEDANQALSEIVQKRFEEQAQ
Ga0211565_1000032326F036270GGAGGMYIENTHKQAEFRGDPDGHRLLELIDLMGFDYDRFSSSGQQTYDQICTILATVKEVKDEP
Ga0211565_1000032327F058913AGGAMIKFVQFSPQLRRLKMNLTKEEAKWLDDKWNDFYYYFQVEDMFEKDQKIFQNIGKKLSEVKQ
Ga0211565_1000032331F038719N/AMDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARSAKDMWS
Ga0211565_1000032332F024809GGAMIYSQKVLFDDWISRCPIDGVFVDEPVSEVQMNDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLTSQNRFEGA
Ga0211565_1000032338F057382AGGAGGMSKNDLTKAELKQLISTIVFFQLGARTKELKTIKTKLKNQLKEMESNGKH
Ga0211565_1000032342F012584N/AMKLKPVLPENVFKLSEDSLPTQSDVDPYGKIMVYRKDVGWSIIQLTDVIQFLAMKHTHWTFTPETP
Ga0211565_1000032344F006793N/AMTNYRSTNEEKEQRINYAADQLAKGERSMVIVKKLVKRYNVSPQQARDYVREARKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTTIDQMGSWDDAYNNHLFKNFSEAKKKVKHSDLDALDNDLPEGEISPF
Ga0211565_1000032347F047122GAGGVKCPKCNKKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEVDKQDLGQHSKQKKKEYYRKVLAELIEDLEGRTYLDKEKGEKFRIWEGV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.