Basic Information | |
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Taxon OID | 3300020433 Open in IMG/M |
Scaffold ID | Ga0211565_10000323 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26489 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (44.44%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Associated Families | 10 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_138 | |||||||
Coordinates | Lat. (o) | 6.3315 | Long. (o) | -102.9484 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006793 | Metagenome | 364 | Y |
F012584 | Metagenome | 279 | Y |
F024809 | Metagenome | 204 | Y |
F025520 | Metagenome | 201 | Y |
F036270 | Metagenome | 170 | Y |
F038719 | Metagenome | 165 | Y |
F047122 | Metagenome | 150 | Y |
F057382 | Metagenome | 136 | N |
F058913 | Metagenome | 134 | Y |
F089953 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211565_1000032317 | F025520 | N/A | MTFDEKFYVLRVHSHIKNVSKFLDKNFIKELKNSDGTLKPHISDLNNTVTYYGKPCIKCTIPTLFIEIEYKTSDGLYLIEHDVFLYDDDYPTLKDLEAYKDKLSYGFASQVTQEIKDIVEAFHNGYGCMCLSEV |
Ga0211565_1000032322 | F089953 | GGAG | MEDLINEEILENISENYQVYKVTSNCIPTKYVIRERSCFADQDLKLVRHNNMSFFPTLEDANQALSEIVQKRFEEQAQ |
Ga0211565_1000032326 | F036270 | GGAGG | MYIENTHKQAEFRGDPDGHRLLELIDLMGFDYDRFSSSGQQTYDQICTILATVKEVKDEP |
Ga0211565_1000032327 | F058913 | AGGA | MIKFVQFSPQLRRLKMNLTKEEAKWLDDKWNDFYYYFQVEDMFEKDQKIFQNIGKKLSEVKQ |
Ga0211565_1000032331 | F038719 | N/A | MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARSAKDMWS |
Ga0211565_1000032332 | F024809 | GGA | MIYSQKVLFDDWISRCPIDGVFVDEPVSEVQMNDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLTSQNRFEGA |
Ga0211565_1000032338 | F057382 | AGGAGG | MSKNDLTKAELKQLISTIVFFQLGARTKELKTIKTKLKNQLKEMESNGKH |
Ga0211565_1000032342 | F012584 | N/A | MKLKPVLPENVFKLSEDSLPTQSDVDPYGKIMVYRKDVGWSIIQLTDVIQFLAMKHTHWTFTPETP |
Ga0211565_1000032344 | F006793 | N/A | MTNYRSTNEEKEQRINYAADQLAKGERSMVIVKKLVKRYNVSPQQARDYVREARKVLTDSIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTTIDQMGSWDDAYNNHLFKNFSEAKKKVKHSDLDALDNDLPEGEISPF |
Ga0211565_1000032347 | F047122 | GAGG | VKCPKCNKKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEVDKQDLGQHSKQKKKEYYRKVLAELIEDLEGRTYLDKEKGEKFRIWEGV |
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