Scaffold Ga0211565_10000029

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10000029
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84505
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018383	Metagenome / Metatranscriptome	235	Y
F040144	Metagenome	162	Y
F094001	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_10000029102	F094001	GGA	MNELLLPPDTPLMKEEGLWELCTDRAYQMMANRRDLDEDVYYDQIKYWTVKIYQANLHLQDTIS
Ga0211565_10000029104	F040144	GGAG	MTYQKPKQLHEFYVTRKCTKMEYFTVRAESMEEAKYEAENGWDYYDFNWEEFDYETVDIIEQEIPEQQLTLSGVL
Ga0211565_1000002998	F018383	GGAG	MELNNEQLEFLKFIVQDFEYNDDNERNMIEQIENKIYQAQENQALKLLTGLT