Scaffold Ga0211556_10097376

Overview

Basic Information

• Taxon OID: 3300020432
• Scaffold ID: Ga0211556_10097376
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002052 (ERX556103-ERR599100)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1401
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_142
• Coordinates
  • Lat. (^o): 25.7109
  • Long. (^o): -88.4916
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006222	Metagenome / Metatranscriptome	378	Y
F039872	Metagenome	163	Y
F102838	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211556_100973761	F006222	GGA	MPRIPTTINISNPKRYGYDLKLDDILLRTATSTQREMTIQSSDVEGGQVNVRQNAEDFTSNLGRVFSRNDFSGGSNLDT
Ga0211556_100973762	F039872	AGGAG	MSNIGNLVDRTFREYLEPMDDLVSYTTLSTGVNDSVTDIVFDGDMLSIEEEDALDKGTIIEINQELMICTDLNAVTNTITVKRGMKGTSAAAHTAGDLIKLSPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLLGSYNAPGTHNYIMSILGAISQYTDFSAGSDTTGVNFSPVTSSLIELPNPFTYTDSDGVSRTITYTTGPSVVHAIQFAGIASGHTAHVTFKKKFIEPTSESDTLSTIGLEDEYVPIIMAGVAAQMLAGRDIPSATTDYISEQLAVSNFPVGSANNVRNSLLQYQQLLMNQARKYLRAKYPEAVSVDGMVFGIQA
Ga0211556_100973763	F102838	N/A	DVSYTVSVGDIVRVDPSGWAFASNGFLRVTSDGNEAADRKIILHFRHS