NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211554_10162202

Scaffold Ga0211554_10162202


Overview

Basic Information
Taxon OID3300020431 Open in IMG/M
Scaffold IDGa0211554_10162202 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.2173Long. (o)-72.0327Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006773Metagenome / Metatranscriptome365Y
F015360Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0211554_101622021F006773N/AMNRIQTKTSLPWKGASEKQVDFFVEVGTTPYGKYGMYKEMIPVGTGSRGSHQEIADSVRLSNPEVFEKFELRQVISRG
Ga0211554_101622022F015360GGAMTKAKMDYLWAPKDEMLVSSLLDSLGFTRVGKSQRYPTGVKYDALVAICDVIGANEKTASMVASRTHELQSERKATGKAPSIDSVVSALASGTMSEADLKQAMKKAGLIK

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